Reproduction steps:
1. Open project attached(Reflection Probe Issues.zip)
2. Open scene (Room_ForestRuins_106)
3. Bake lights.
4. Press play.
5. In the left-top corner there is a button to switch between baked and realtime.
6. Stop play mode.
7. Build it for standalone player.
8. Open it and repeat step 5.

Expected result: Probe will look the same when using baked and realtime.
Actual result: Probe looks different from baked and realtime.

Reproduced on: 5.5.0f3, 5.5.3p1, 5.6.0f3, 2017.1.0b1.