Reproduction steps:
1. Open the attached “IN-20837_min.zip” project
2. Open the “Assets/SuperScience/Runtime/SceneMetadata/Sample2.unity” scene
3. In the Inspector window, observe the Asset Label
4. In the Hierarchy window, click the “Cube” GameObject
5. In the Inspector window, disable the “Cube” GameObject
6. Click “Ctrl + S” to save the scene
7. In the Project window, click “Assets/SuperScience/Runtime/SceneMetadata/Sample2.unity”
8. In the Inspector window, observe the Asset Label

Expected result: The Asset Label “MetadataExample” remains
Actual result: The Asset Label disappears

Reproducible with: 2022.2.0a1, 2022.2.0b13, 2023.1.0a16
Not reproducible with: 2020.3.41f1, 2021.3.12f1, 2022.1.21f1

Reproducible on: Ubuntu 20.04.5, Windows 11 Pro 21H2