How to reproduce:
1. Open the attached project
2. Go to the Project window-> Scenes and open "SampleScene" scene
3. Enter the Play mode
4. Inspect the Scene view
5. Go to the Project window-> Scenes-> SampleScene and open the "ParetCube scene"
6. Inspect in the Hierarchy window "EmptyParent" and "NonEmptyParent"

Expected: SubScene objects inherit collision position transform from parent empty GameObject
Actual: SubScene objects collision position transform is incorrect

Reproducible with: 2019.2.0b3

Note: Could not test with earlier versions because of the thrown errors
Could not reproduce on 2019.3 because gameobjects becomes invisible