Reproduction steps:
1. Open the attached “ContactFilterLayerMask.zip“ project
2. Open the “SampleScene” scene
3. Duplicate the “Square” GameObject and position it anywhere where it overlaps the “Checker” GameObject
4. Enter Play Mode
5. Observe the “Square” GameObjects' colors

Expected result: Both GameObjects are green
Actual result: The duplicated GameObject remains red

Reproduced with: 2020.3.36f1, 2021.3.5f1, 2022.1.8f1, 2022.2.0a18, 2023.1.0a1

Reproduced on: Windows 10, Windows 11

Note: The duplicate GameObject starts behaving as expected after reopening the scene, but the user pointed out that sometimes it still doesn’t