Steps to reproduce:
1. Create a new project with Unity Version Control
2. Open Package Manager (Window → Package Manager)
3. In the Package Manager window, press +
4. Select “Install package by name…”
5. Add “com.unity.xr.openxr” by name
6. Open Unity Versions Control window (Window → Unity Versions Control)
7. Check in all the files
8. Close and open your created project
9. Open and observe Unity Versions Control window

Actual result: The “Assets/XR/Settings/Open XR Package Settings.asset” is shows as Checked-out (Changed)
Expected result: When editor closes “Assets/XR/Settings/Open XR Package Settings.asset” isn’t be changed and Unity Version Control shows that you have to commit it

Reproducible with: 1.2.0 (6000.0.72f1), 1.17.0-pre.2 (6000.0.72f1, 6000.3.12f1, 6000.4.1f1, 6000.5.0b1, 6000.6.0a1 (7dc703ab9bd8))
Not reproducible with: 1.1.1 (6000.0.72f1)

Reproducible on: Tahoe 26.3.1 (25D125)
Not reproducible on: No other environment tested

Note:
- Sometimes you need to close and open the Unity editor couple times to reproduce the issue