To reproduce:
1) Open attached project (there is one scene, called Untitled) and build standalone player (version tested: OSX)
2) Enter playmode, exit playmode. In editor console log you see:
[3] +OnDisable, null: False 

[2] +OnDisable, null: False 

[1] +OnDisable, null: False 

[0] +OnDisable, null: False 

[0] -OnDestroy, null: False 

[1] -OnDestroy, null: False 

[2] -OnDestroy, null: False 

[3] -OnDestroy, null: False

3) Run standalone app. Press "Close App". In Player log you see
[3] +OnDisable, null: False 

[3] -OnDestroy, null: False

[2] +OnDisable, null: False 

[1] +OnDisable, null: False 

[1] -OnDestroy, null: False 

[2] -OnDestroy, null: False 

[0] +OnDisable, null: False 

[0] -OnDestroy, null: False