Spherical Harmonics cannot be replaced at runtime when having multiple Scenes in the Hierarchy window and Light Probes count is doubled in 2019.4, 2020.1, 2020.2

How to reproduce:
1. Open the user's attached "Bug.zip" project
2. Open the "Main" Scene
3. Drag the "Graphics" Scene into the Hierarchy window
4. Enter Play Mode
5. Observe the Console log

Expected result: No error messages are thrown in the Console log and spherical harmonics are getting replaced at runtime
Actual result: "Length mismatch! 140 != 70" and "Trying to set 70 coefficients, but the number of probes is 140." error messages are thrown in the Console log, spherical harmonics are not getting replaced at runtime

Reproducible with: 2019.4.14f1, 2020.1.11f1, 2020.2.0b10, 2021.1.0a3
Could not test with: 2018.4.28f1 (LightProbes.Tetrahedralize method is not supported)

Note:
- In 2021.1.0a1 and above the LightmapSettings.lightProbes.bakedProbes.Length is correct, but for some reason, spherical harmonics are not replaced at runtime (See attached "1286726_2021.mp4")
- The issue is not reproducible if the other scene is loaded instead and not in the Hierarchy window from the beginning (See attached "repro.mp4")