How to reproduce:
1. Open the “IN-97138_repro“ project
2. Make sure that Perforce is set up and the project is connected to the workspace (Edit → Project Settings → Version Control)
3. In Perforce, make sure that the files in the Packages folder are submitted (select the Packages folder and press Submit)
4. In the Editor, select Window → Package Manager
5. Install a different version of the “2D SpriteShape“ package (10.1.0 or 10.0.6)
6. Refresh the Perforce workspace and observe the manifest.json and packages-lock.json files

Expected result: The files are checked out (red check marks are seen over the files)
Actual result: The files are not checked out (no red check marks are seen over the files)

Reproducible with: 2023.3.0b1, 6000.0.47f1, 6000.1.0f1, 6000.2.0a9
Not reproducible with: 2022.3.61f1, 2023.3.0a19

Reproducible on: Windows 10
Not reproducible in: No other environment tested

Notes:
- Issue does not reproduce if Assets/Editor/SpriteAtlasAssetCheckout.cs is removed
- Make sure to revert the files before reproducing the issue again